SNP Profiles of NA 33   View Data

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 Key

 1234567891011121314
_Input profile
CTCCTTCCGGGTATCCCCAGGGAGCTAA
1._RUQ_1577
_______CC___AG__
2._RUQ_1577
_______CC___AG__
3._NA_33
_______CC___AG__
4._NA_33
_______AC___GG__
5._NA_33
_______AC___GG__
6._NA_33
_______AC___GG__
7._NA_33
_______AC___GG__
8._NA_33
_______AC___GG__
9._NA_33
_______AC___GG__
10._NA_33
_______AC___GG__
11._NA_33
_______AC___GG__
12._NA_33
_______AC___GG__
13._NA_33
_______AC___GG__
14._NA_33
_______AC___GG__
15._NA_33
_______AC___GG__
16._NA_33
_______AC___GG__
17._NA_33
_______AC___AG__
18._GC-01-6-1-06
_______AC___GG__
19._GC-01-6-1-06
_______AC___GG__
20._GC-01-6-1-06
_______AC___GG__
21._GC-01-006-1-06
_______AC___GG__
22._GC-01-006-1-06
_______AC___GG__
23._GC-01-006-1-06
_______AC___GG__
24._GC-01-006-1-06
_______AC___GG__
25._GC-01-006-1-06
_______AC___GG__
26._GC-01-006-1-06
_______AC___GG__
27._GC-01-006-1-06
_______AC___GG__
28._GC-01-006-1-06
_______AC___GG__
29._NA_33
_______AC___GG__
30._GC-01-6-1-06
_______AC___GG__
31._RUQ_1577
_______CC___AG__
32._NA33
_______AC___GG__
33._NA_33
_______AC___GG__
34._GC-01-6-1-6
_______AC___GG__
35._MITC-000715
_______AC___GG__
 1516171819202122232425262728
_Input profile
GGACCCACCCCCAAGGATAACCCTAACC
1._RUQ_1577
GG____CC_GG_AACC___
2._RUQ_1577
_____CC_GG_AA____
3._NA_33
_____CC_GG_AA____
4._NA_33
_____CC_GG_AC____
5._NA_33
_____CC_GG_AC____
6._NA_33
_____CC_GG_AC____
7._NA_33
_____CC_GG_AC____
8._NA_33
_____CC_GG_AC____
9._NA_33
_____CC_GG_AC____
10._NA_33
_____CC_GG_AC____
11._NA_33
_____CC_GG_AC____
12._NA_33
_____CC_GG_AC____
13._NA_33
_____CC_GG_AC____
14._NA_33
_____CC_GG_AC____
15._NA_33
_____CC_GG_AC____
16._NA_33
_____CC_GG_AC____
17._NA_33
_____CC_GG_AA____
18._GC-01-6-1-06
GG____CC_GG_ACCC___
19._GC-01-6-1-06
GG____CC_GG_ACCC___
20._GC-01-6-1-06
GG____CC_GG_ACCC___
21._GC-01-006-1-06
GG____CC_GG_ACCC___
22._GC-01-006-1-06
GG____CC_GG_ACCC___
23._GC-01-006-1-06
GG____CC_GG_ACCC___
24._GC-01-006-1-06
GG____CC_GG_ACCC___
25._GC-01-006-1-06
GG____CC_GG_ACCC___
26._GC-01-006-1-06
GG____CC_GG_ACCC___
27._GC-01-006-1-06
GG____CC_GG_ACCC___
28._GC-01-006-1-06
GG____CC_GG_ACCC___
29._NA_33
_____CC_GG_AC____
30._GC-01-6-1-06
GG____CC_GG_ACCC___
31._RUQ_1577
GG____CC_GG_AAGG___
32._NA33
_______GG_ACCC___
33._NA_33
GG____CC_GG_ACGG___
34._GC-01-6-1-6
GG____CC_GG_ACGG___
35._MITC-000715
GG____CC_GG_ACGG___
 2930313233343536373839404142
_Input profile
AGCCTTGGAGCTTTCCTTTTCGGGGGAG
1._RUQ_1577
__TTGGAG__CC__CG-_AG
2._RUQ_1577
AG__GG______CG__AG
3._NA_33
AG__GG______CG__AG
4._NA_33
AG__GG______GG__AG
5._NA_33
AG__GG______GG__AG
6._NA_33
AA__GG______GG__AG
7._NA_33
AA__GG______GG__AG
8._NA_33
AA__GG______GG__AG
9._NA_33
AA__GG______GG__AG
10._NA_33
AA__GG______GG__AG
11._NA_33
AA__GG______GG__AG
12._NA_33
AA__GG______GG__AG
13._NA_33
AA__GG______GG__AG
14._NA_33
AA__GG______GG__AG
15._NA_33
AA__GG______GG__AG
16._NA_33
AA__GG______GG__AG
17._NA_33
AA__GG______CC__AG
18._GC-01-6-1-06
AA_CTGGGG__CC_CGGGGG_AG
19._GC-01-6-1-06
AA_CTGGGG__CC_CGGGGG_AG
20._GC-01-6-1-06
AA_CTGGGG__CC_CGGGGG_AG
21._GC-01-006-1-06
AA_CTGGGG__CC_CGGGGG_AG
22._GC-01-006-1-06
AA_CTGGGG__CC_CGGGGG_AG
23._GC-01-006-1-06
AA_CTGGGG__CC_CGGGGG_AG
24._GC-01-006-1-06
AA_CTGGGG__CC_CGGGGG_AG
25._GC-01-006-1-06
AA_CTGGGG__CC_CGGGGG_AG
26._GC-01-006-1-06
AA_CTGGGG__CC_CGGGGG_AG
27._GC-01-006-1-06
AA_CTGGGG__CC_CGGGGG_AG
28._GC-01-006-1-06
AA_CTGGGG__CC_CGGGGG_AG
29._NA_33
AA__GG______GG__AG
30._GC-01-6-1-06
AA_CTGGGG__CC_CGGGGG_AG
31._RUQ_1577
___CCAG__CC_CGCGGG_AG
32._NA33
__________CC___
33._NA_33
___CCGG__CC_CGCCGG_AG
34._GC-01-6-1-6
___CCGG__CC_CGCCGG_AG
35._MITC-000715
___CCGG__CC_CGCCGG_AG
 4344454647484950515253545556
_Input profile
CCCTAACCGGCTCCGTAAGTGGTTAGGG
1._RUQ_1577
CC________GT____
2._RUQ_1577
____GG_CC__GT____
3._NA_33
____GG_CC__GT____
4._NA_33
____AG_CC__GT____
5._NA_33
____AG_CC__GT____
6._NA_33
____AG_CC__GT____
7._NA_33
____AG_CC__GT____
8._NA_33
____AG_CC__GT____
9._NA_33
____AG_CC__GT____
10._NA_33
____AG_CC__GT____
11._NA_33
____AG_CC__GT____
12._NA_33
____AG_CC__GT____
13._NA_33
____AG_CC__GT____
14._NA_33
____AG_CC__GT____
15._NA_33
____AG_CC__GT____
16._NA_33
____AG_CC__GT____
17._NA_33
____AG_CC__TT____
18._GC-01-6-1-06
CC___AG_CC__GT____
19._GC-01-6-1-06
CC___AG_CC__GT____
20._GC-01-6-1-06
CC___AG_CC__GT____
21._GC-01-006-1-06
CC___AG_CC__GT____
22._GC-01-006-1-06
CC___AG_CC__GT____
23._GC-01-006-1-06
CC___AG_CC__GT____
24._GC-01-006-1-06
CC___AG_CC__GT____
25._GC-01-006-1-06
CC___AG_CC__GT____
26._GC-01-006-1-06
CC___AG_CC__GT____
27._GC-01-006-1-06
CC___AG_CC__GT____
28._GC-01-006-1-06
CC___AG_CC__GT____
29._NA_33
____AG_CC_______
30._GC-01-6-1-06
CC___AG_CC_______
31._RUQ_1577
____GG____AC____
32._NA33
______________
33._NA_33
____AG____AC____
34._GC-01-6-1-6
____AG____AC____
35._MITC-000715
____AG____AC____
 575859           
_Input profile
CCTTATX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_1577
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._RUQ_1577
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._NA_33
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._NA_33
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._NA_33
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._NA_33
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._NA_33
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._NA_33
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._NA_33
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._NA_33
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._NA_33
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._NA_33
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._NA_33
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._NA_33
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._NA_33
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._NA_33
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._NA_33
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GC-01-6-1-06
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._GC-01-6-1-06
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._GC-01-6-1-06
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._GC-01-006-1-06
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GC-01-006-1-06
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._GC-01-006-1-06
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._GC-01-006-1-06
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._GC-01-006-1-06
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._GC-01-006-1-06
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._GC-01-006-1-06
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._GC-01-006-1-06
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
29._NA_33
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
30._GC-01-6-1-06
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
31._RUQ_1577
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
32._NA33
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
33._NA_33
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
34._GC-01-6-1-6
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
35._MITC-000715
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: NA_33 RUQ_1577

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

1._NA_33 RUQ_1577

identical
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._NA_33 RUQ_1577

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

3._NA_33

identical
13 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A D371 T2
 Dapeng Zhang, 2016

4._NA_33

80.8 %
13 shared markers

Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 397 I-032
 Dapeng Zhang, 2016

5._NA_33

80.8 %
13 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Row 24 C0211 44
 Dapeng Zhang, 2016

6._NA_33

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 14 > F
 Dapeng Zhang, 2016

7._NA_33

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 1 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

8._NA_33

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 10 > F
 Dapeng Zhang, 2016

9._NA_33

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 11 > F
 Dapeng Zhang, 2016

10._NA_33

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 12 > F
 Dapeng Zhang, 2016

11._NA_33

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 15 > F
 Dapeng Zhang, 2016

12._NA_33

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 16 > F
 Dapeng Zhang, 2016

13._NA_33

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 2 > FP
 Dapeng Zhang, 2016

14._NA_33

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 3 > FP
 Dapeng Zhang, 2016

15._NA_33

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 6 > FP
 Dapeng Zhang, 2016

16._NA_33

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 7 > FP
 Dapeng Zhang, 2016

17._NA_33

76.9 %
13 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: M6 18, 19
 Dapeng Zhang, 2016

18._NA_33 GC-01-6-1-06

76.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL3
Notes: PL3 FP2
 Mars, 2018

19._NA_33 GC-01-6-1-06

76.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL12
Notes: PL12 FP4
 Mars, 2018

20._NA_33 GC-01-6-1-06

76.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL14
Notes: PL14 FP3
 Mars, 2018

21._NA_33 GC-01-006-1-06

76.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP5
 Mars, 2018

22._NA_33 GC-01-006-1-06

76.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP6
 Mars, 2018

23._NA_33 GC-01-006-1-06

76.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP11
 Mars, 2018

24._NA_33 GC-01-006-1-06

76.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP12
 Mars, 2018

25._NA_33 GC-01-006-1-06

76.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP8
 Mars, 2018

26._NA_33 GC-01-006-1-06

76.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP9
 Mars, 2018

27._NA_33 GC-01-006-1-06

76.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP13
 Mars, 2018

28._NA_33 GC-01-006-1-06

76.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16 > FP14
 Mars, 2018

29._NA_33

75 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 9 > FP
 Dapeng Zhang, 2016

30._NA_33 GC-01-6-1-06

75 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL9
Notes: PL9 FP1
 Mars, 2018

31._NA_33 RUQ_1577

70.6 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

32._NA_33 NA33

57.1 %
7 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

33._NA_33

52.9 %
17 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: FP 4
 Mars, 2018

34._NA_33 GC-01-6-1-6

52.9 %
17 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: 1 > FP5
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

35._NA_33 MITC-000715

52.9 %
17 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP33 4TcSNP49 5TcSNP52
6TcSNP131 7TcSNP143 8TcSNP144 9TcSNP176 10TcSNP189
11TcSNP194 12TcSNP230 13TcSNP290 14TcSNP305 15TcSNP329
16TcSNP363 17TcSNP421 18TcSNP519 19TcSNP522 20TcSNP529
21TcSNP546 22TcSNP577 23TcSNP589 24TcSNP591 25TcSNP602
26TcSNP640 27TcSNP642 28TcSNP644 29TcSNP645 30TcSNP660
31TcSNP702 32TcSNP723 33TcSNP731 34TcSNP739 35TcSNP800
36TcSNP823 37TcSNP835 38TcSNP836 39TcSNP872 40TcSNP899
41TcSNP945 42TcSNP998 43TcSNP999 44TcSNP1010 45TcSNP1019
46TcSNP1053 47TcSNP1062 48TcSNP1112 49TcSNP1144 50TcSNP1205
51TcSNP1230 52TcSNP1253 53TcSNP1275 54TcSNP1293 55TcSNP1401
56TcSNP1404 57TcSNP1458 58TcSNP1524 59TcSNP1527